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Example 1: 2D visualization

  • spatial(2D) & UMAP of one sample

In this example, PANEL 1 and PANEL 2 are synchronized by feature and sample, which means their sample and feature to plot will be kept the same. Then you can check different genes without adjust them separately.

image-20250103162409550

  • spatial(2D) of different samples

In this example, PANEL 1 and PANEL 2 are synchronized by feature, highlighting and embedding, but no sample. Therefore, we could check, in multiple samples simultaneously, the items in metadata or specific genes on same embedding. These samples could be from replicates, different stage, or different datasets.

image-20250110182304449